Publications and Theses
The documents referenced below are included by the contributing
authors as a means to ensure timely dissemination of scholarly and technical
work on a non-commercial basis. Copyright and all rights therein are maintained
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Sourav Chatterji, Ichitaro Yamazaki, Zhaojun Bai and Jonathan Eisen,
CompostBin: A DNA composition-based algorithm for binning environmental shotgun reads , to appear in RECOMB 2008.
Drosophila Comparative Genome Sequencing and Analysis Consortium,
Evolution of genes and genomes in the context of the Drosophila phylogeny,
Nature, 450 (2007), p 203-218.
Sourav Chatterji and Lior Pachter, Patterns of gene duplication and intron loss in the ENCODE regions suggest a confounding factor, Genomics 2007, 90(1):44-48.
Sourav Chatterji and Lior Pachter, Reference based gene annotation with GeneMapper. Genome Biology 2006, 7(4):R29.
Sourav Chatterji and Lior Pachter, Large
multiple organism genefinding by collapsed Gibbs Sampling. Journal
of Computational Biology 2005, 12(6):599-608.
Chicken Genome Sequencing Consortium, Sequence
and comparatve analysis of chicken genome provide unique perspectives into
vertebrate evolution. Nature 2004, 432(7018):695-716.
Rat Genome Sequencing Consortium, Genome
sequence of the Brown Norway rat yields insights into mammalian evolution.Nature 2004, 428(6982):493-521.
Adam M. Breier, Sourav Chatterji and Nicholas R. Cozzarelli, Prediction
of Saccharomyces cerevisiae Replication Origins.
Genome Biology 2004, 5(4):R22.
Sourav Chatterji and Lior Pachter, Multiple
Organism Gene Finding by Collapsed Gibbs Sampling. Proceedings
of the Eighth Annual International Conference on Computational Molecular
Biology 2004, 187-193.
Sourav Chatterji, Manikandan Narayanan, Jason Duell and Leonid Oliker. Performance
Evaluation of Two Emerging Media Processors: VIRAM and Imagine. (IPDPS
Sourav Chatterji, S.S.K Evani, Sumit Ganguly, Mahesh Datt Yemmanuru.
On the Complexity (Non-Approximability) of Query Optimization.
Sourav Chatterji , Y. Mahesh Datt. On Finding Approximate Solutions
to the Query Optimization Problem (B. Tech Thesis IIT Kanpur). [ps.gz]